Description Usage Arguments Value Author(s)
View source: R/getProfilesMiddle.R
This function fills spaces in the profiles, that exceed a given distance. It is called by getProfiles, if method ”middle” is chosen.
1 | fillNA(distribution, mapping, upstream, downstream, gffAnno, distance, spacing)
|
distribution |
a list containing the profiles for each feature |
mapping |
a mapping of, which was constructed by the mapFeatures function |
gffAnno |
a data frame containing the annotation of the features of interest |
upstream |
how many basepairs upstream of the feature start (feature start on the crick strand is end in gffAnno) should be taken. |
downstream |
how many basepairs downtream of the feature start (feature end on the crick strand is start in gffAnno) should be taken. |
distance |
spaces, exceeding this distance are filled with NA |
spacing |
probe spacing on the chip |
a list with one entry for each feature.
Benedikt Zacher zacher@lmb.uni-muenchen.de
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.