Files in TFutils

TFutils

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/hocomoco.mono.rda

data/fimoMap.rda

data/named_tf.rda

data/tfhash.rda

data/tftColl.rda

data/datalist

data/lambert_snps.rda

data/cisbpTFcat.rda

data/cisbpTFcat_2.0.rda

data/metadata_tf.rda

data/hocomoco.mono.sep2018.rda

data/encode690.rda

data/gwascat_hg19_chr17.rda

data/demo_fimo_granges.rda

data/tftCollMap.rda

data/seqinfo_hg19_chr17.rda

data/fimo16.rda

R/tfutils.R R/browse_lambert_gwaslinks.R R/genepi.R R/gob.R R/tfcirc.R R/TFCatalog-class.R R/grabTab.R R/lamget.R R/importFIMO.R R/genemodel2.R R/fimo_granges.R R/setup_lambert.R R/data.R R/ensRsLoc.R R/tasks.R R/setupHIZE.R vignettes/fimo16.Rmd

vignettes/F1000header.png

vignettes/tfsrcs.bib

vignettes/TFutils.Rmd

vignettes/tfTargsApp.png

vignettes/f1000_styles.sty

vignettes/README.txt

vignettes/ormdl3CEBPB.png

vignettes/AMIGOplus.png

vignettes/AMIGO.png

vignettes/TFutils_f1000/F1000header.png

vignettes/TFutils_f1000/tfsrcs.bib

vignettes/TFutils_f1000/TFutils.Rmd

vignettes/TFutils_f1000/tfTargsApp.png

vignettes/TFutils_f1000/f1000_styles.sty

vignettes/TFutils_f1000/ormdl3CEBPB.png

vignettes/TFutils_f1000/AMIGOplus.png

vignettes/TFutils_f1000/Makefile

vignettes/TFutils_f1000/AMIGO.png

man/browse_lambert_main.Rd man/genemodelDF.Rd man/genemodForGviz.Rd man/fimo_granges.Rd man/tffamCirc.prep.Rd man/hocomoco.mono.sep2018.Rd man/tftCollMap.Rd man/TFCatalog.Rd man/lambert_snps.Rd man/demo_fimo_granges.Rd man/TFCatalog-class.Rd man/named_tf.Rd man/cisbpTFcat_2.0.Rd man/seqinfo_hg19_chr17.Rd man/topTraitsOfTargets.Rd man/importFIMO_local_split.Rd man/show-TFCatalog-method.Rd man/fimoMap.Rd man/HGNCmap.Rd man/TFtargs.Rd man/gwascat_hg19_chr17.Rd man/get_rslocs_38.Rd man/directHitsInCISBP.Rd man/retrieve_lambert_main.Rd man/defaultCircosParms.Rd man/setupHIZE.Rd man/tfhash.Rd man/URL_s3_tf.Rd man/encode690.Rd man/importFIMO.Rd man/hocomoco.mono.Rd man/browse_lambert_gwaslinks.Rd man/metadata_tf.Rd man/cisbpTFcat.Rd man/grabTab.Rd man/tftColl.Rd man/tffamCirc.plot.Rd man/fimo16.Rd man/anchor_pmids.Rd tests/testthat.R tests/testthat/test.R

inst/doc/TFutils.html

inst/doc/fimo16.Rmd inst/doc/TFutils.Rmd

inst/doc/fimo16.html

inst/doc/TFutils.R inst/doc/fimo16.R

inst/lambert/S4_DiseaseTFMuts.csv

inst/lambert/S3_140kMuts.csv.gz

inst/msigdb_extracts/notes.txt

inst/msigdb_extracts/make.feather.hist.txt

inst/M5946_1/chr17.bed

inst/M5946_1/chr17.bed.gz.tbi

inst/M5946_1/chr1.bed.gz

inst/M5946_1/chr1.bed

inst/M5946_1/chr17.bed.gz

inst/M5946_1/chr1.bed.gz.tbi

inst/scripts/fixups.hist.txt

inst/scripts/txdbUse.R inst/scripts/doOnto.R inst/scripts/buildTftCollMap.R inst/scripts/getTFMeta.R

TFutils documentation built on Nov. 8, 2020, 8:28 p.m.