tffamCirc.prep: set up list of pfms in motifStack protocol

Description Usage Arguments Value Note Examples

View source: R/tfcirc.R

Description

set up list of pfms in motifStack protocol

Usage

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tffamCirc.prep(tffam = "Paired-related HD factors{3.1.3}",
  trimfac = 0.4)

Arguments

tffam

character(1) name of TF family as found in TFutils::hocomoco.mono field TF family

trimfac

fraction passed as parameter t to motifStack::trimMotif

Value

a list of pfm instances as defined in motifStack

Note

Uses MotifDb, motifStack to create a list of pfms

Examples

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n1 = tffamCirc.prep()
str(n1)

TFutils documentation built on May 2, 2020, 2:01 a.m.