TFCatalog: Constructor for TFCatalog

Description Usage Arguments Value Examples

View source: R/TFCatalog-class.R

Description

Constructor for TFCatalog

Usage

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TFCatalog(name, nativeIds, HGNCmap, metadata)

Arguments

name

informative character(1) for collection

nativeIds

character() vector of identifiers used by collection creators

HGNCmap

data.frame with column 1 nativeIds, column 2 HGNC or hgnc.heur for MSigDb and any other columns of use

metadata

a list of metadata elements

Value

instance of TFCatalog

Examples

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if (require("GSEABase")) {
 TFs_MSIG = TFCatalog(name="MsigDb.TFT",nativeIds=names(TFutils::tftColl),
 HGNCmap=data.frame(TFutils::tftCollMap,stringAsFactors=FALSE))
 TFs_MSIG
}

TFutils documentation built on May 2, 2020, 2:01 a.m.