TFtargs: gadget to help sort through tags naming TFs

Description Usage Arguments Value Note Examples

View source: R/gob.R

Description

gadget to help sort through tags naming TFs

Usage

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TFtargs(gscoll = TFutils::tftColl, initTF = "VDR_Q3",
  gwcat = TFutils::gwascat_hg19_chr17,
  gadtitle = "Search for a TF; its targets will be checked for mapped status in GWAS catalog")

Arguments

gscoll

a GSEABase GeneSetCollection

initTF

character(1) initial TF string for app

gwcat

GRanges-like structure with GWAS catalog information

gadtitle

character(1) a title for the gadget panel

Value

on app conclusion a data.frame is returned

Note

Will use TFutils::gwascat_hg19_chr17 to look for 'MAPPED_GENE' field entries matching targets, also hardcoded to use org.Hs.eg.db to map symbols

Examples

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TFutils documentation built on May 2, 2020, 2:01 a.m.