setupHIZE: process a gene_attribute_matrix.txt file from harmonizeome...

Description Usage Arguments Note

View source: R/setupHIZE.R

Description

process a gene_attribute_matrix.txt file from harmonizeome into a GeneSetCollection

Usage

1
setupHIZE(txtfn = "gene_attribute_matrix.txt", tag)

Arguments

txtfn

character(1) path to gene_attribute_matrix.txt file from harmonizeome

tag

character(1) will be added to shortDescription field of each GeneSet instance

Note

After uncompressing content of http://amp.pharm.mssm.edu/static/hdfs/harmonizome/data/cheappi/gene_attribute_matrix.txt.gz run this on gene_attribute_matrix.txt with tag="CHEA".


TFutils documentation built on May 2, 2020, 2:01 a.m.