Man pages for TFutils
TFutils

cisbpTFcatcisbpTFcat: data.frame with information on CISBP TFs for...
directHitsInCISBPdemonstrate interoperation of TF catalog with GWAS catalog
encode690encode690: DataFrame extending AnnotationHub metadata about...
fimo16fimo16: GenomicFiles instance to AWS S3-resident FIMO bed for...
fimoMapfimoMap: table with Mnnnn (motif PWM tags) and HGNC symbols...
genemodelDFuse EnsDb to generate an exon-level model of genes identified...
genemodForGvizcreate a GeneRegionTrack instance for selected symbols
grabTabcreate table of TF targets and related metadata
gwascat_hg19_chr17gwascat_hg19: GRanges of march 21 2018 EBI gwascat, limit to...
HGNCmapsimple accessor for HGNCmap component of TFCatalog
hocomoco.monohocomoco.mono: data.frame with information on HOCOMOCO TFs...
hocomoco.mono.sep2018hocomoco.mono.sep2018: data.frame with information on...
importFIMOimport a FIMO bed-like [email protected] utils read.delim
importFIMO_local_splitutility to read FIMO outputs from local resource(cluster),...
metadata_tfmetadata_tf: list with metadata (motif_if and hgnc_symbol)...
named_tfnamed_tf: named list with the names being the hgnc_symbol of...
show-TFCatalog-methodproduce a concise report on TFCatalog instance
TFCatalogConstructor for TFCatalog
TFCatalog-classdefine a structure to hold information about TFs from diverse...
tfhashtfhash: data.frame with MSigDb TFs, TF targets as symbol or...
TFtargsgadget to help sort through tags naming TFs
tftColltftColl: GSEABase GeneSetCollection for transcription factor...
tftCollMaptftCollMap: data.frame with information on MSigDb TFs for...
topTraitsOfTargetsUse MSigDB TF targets resource to find targets of input TF...
URL_s3_tfutility to generate link to biocfound bucket for FIMO TFBS...
TFutils documentation built on Nov. 1, 2018, 2:38 a.m.