vstUMI4C: Variance stabilizing transformation
In UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data
Description
Usage
Arguments
Details
Value
View source: R/differentialNbinomWaldTestUMI4C.R
Description
Using a DDS object performs a variance stabilizing transformation from DESeq2
package to the UMI4C counts
Usage
1
vstUMI4C(dds)
Arguments
dds
DDS object generated by UMI4C2dds
Details
This function estimate the size factors and dispersions of the counts
base on DESeq for infering the VST distribution and
transform raw UMI4C counts.
Value
DDS object with variance stabilizing transformation counts
UMI4Cats documentation built on Dec. 31, 2020, 2:01 a.m.
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Description Usage Arguments Details Value
View source: R/differentialNbinomWaldTestUMI4C.R
Description
Using a DDS object performs a variance stabilizing transformation from DESeq2 package to the UMI4C counts
Usage
1 | vstUMI4C(dds)
|
Arguments
dds |
DDS object generated by |
Details
This function estimate the size factors and dispersions of the counts
base on DESeq for infering the VST distribution and
transform raw UMI4C counts.
Value
DDS object with variance stabilizing transformation counts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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