burnin: Indicator for running a MCMC burnin

In XDE: XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Description

When TRUE, log files from MCMC chains are not written to file. When FALSE, log files are written for every parameter by default.

Usage

burnin(object)

Arguments

object

An object of class XdeParameter

Value

logical

Author(s)

R. Scharpf

See Also

XdeParameter-class

Examples

## Not run: 
data(expressionSetList)
params <- new("XdeParameter", phenotypeLabel="adenoVsquamous",
              esetList=expressionSetList)

##the replacement method for burnin is called for its side effect of
##providing default values of storing MCMC chains
output(params)[2:22]
burnin(params) <- FALSE
output(params)[2:22]
burnin(params) <- TRUE
output(params)[2:22]

## End(Not run)

XDE documentation built on Nov. 8, 2020, 5:02 p.m.