ExpressionSetList-class: A class for containing a list of ExpressionSets
In XDE: XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Description Objects from the Class Slots Extends Methods Author(s) See Also Examples

Each element in the list must be a valid ExpressionSet. The featureNames must be identical for each ExpressionSet.

Objects can be created by calls of the form new("ExpressionSetList", ...).

.Data:: Object of class "list"

Class "list", from data part. Class "vector", by class "list", distance 2. Class class.AssayData, by class "list", distance 2.

"[": signature(x = "ExpressionSetList") Subsets each ExpressionSet element in the list.
coerce: signature(from = "list", to = "ExpressionSetList") Coerces a list of ExpressionSet objects to an object of class ExpressionSetList. The validityMethod for the ExpressionSetList class will return an error if the featureNames for each ExpressionSet are not identical.
dim: signature(x="ExpressionSetList") applies dim to each element of the list.
featureNames: signature(object = "ExpressionSetList") Accessor for the featureNames
geneCenter: signature(object = "ExpressionSetList") See geneCenter
lapply: signature(object="ExpresssionSetList") Coerces instance of ExpressionSetList to a list and does lapply on the list. Returns an object of class ExpressionSetList
nSamples: signature(x = "ExpressionSetList") Numerical vector giving the number of samples in each ExpressionSet
nrow: signature(x = "ExpressionSetList") Numerical: number of features or genes
pData: signature(object = "ExpressionSetList") returns a list of data.frames. The elements of the list correspond to the studies in the ExpressionSetList object.

phenotype: signature(object="ExpressionSetList", varLabel="character") Accessor for the clinical variable. Assumes that the clinical variable has the same name in each study.
standardizeSamples: signature(object = "ExpressionSetList") See standardizeSamples
studyCenter: signature(object = "ExpressionSetList") See studyCenter
zeroNu: signature(object = "ExpressionSetList") See zeroNu.

R. Scharpf

XdeMcmc-class, XdeParameter-class

1 2	showClass("ExpressionSetList") data(expressionSetList)

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Welcome to XDE version 2.22.0
Class "ExpressionSetList" [package "XDE"]

Slots:
            
Name:  .Data
Class:  list

Extends: 
Class "list", from data part
Class "vector", by class "list", distance 2
Class "AssayData", by class "list", distance 2
Class "vector_OR_factor", by class "list", distance 3