Files in XDE
XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression
CHANGES
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
src/Random_v2.h
src/UpdateTau2RMH.h
src/ReportT.h
src/UpdateRC2MH.h
src/Random.h
src/ReportA.h
src/PotentialDelta.h
src/UpdateTau2RhoMH.h
src/Rinterface_v2.cpp
src/ReportRho.h
src/UpdateC2Gibbs.h
src/ReportPotential.h
src/PotentialXqg.h
src/PotentialNu.h
src/UpdateBMH.h
src/ReportDiffexpressed.h
src/UpdateRhoGamma2MH.h
src/PotentialDDelta.h
src/Structure.cpp
src/UpdateAMH.h
src/UpdateSigma2MH.h
src/Potential_v2.cpp
src/ReportTau2Rho.h
src/PotentialPhiqg.h
src/PotentialXi.h
src/ReportXi.h
src/Utility_v2.cpp
src/diffExpressed_main.cpp
src/Random_v2.cpp
src/Matrix.h
src/ReportPhi.h
src/Utility_v2.h
src/PotentialSigma2.h
src/PotentialTau2.h
src/Potential.h
src/ReportTau2R.h
src/PotentialNug.h
src/Cholesky.h
src/PotentialDDeltag.h
src/PotentialPhi.h
src/ReportR.h
src/UpdatePhiMH.h
src/UpdateTMH.h
src/UpdateRhoMH.h
src/UpdateTau2RDDeltaMH.h
src/ReportLambda.h
src/Potential_v2.h
src/ReportC2.h
src/PotentialX.h
src/Makevars
src/PotentialSigma2qg.h
src/UpdateDeltaMH.h
src/Structure.h
src/PotentialFunction.h
src/ReportProbDelta.h
src/ReportDDelta.h
src/PotentialB.h
src/PotentialZero.h
src/UpdateMultiplicativePositive.h
src/ReportB.h
src/UpdateGamma2Gibbs.h
src/UpdateThetaMH.h
src/ReportNu.h
src/UpdateLambdaMH.h
src/Matrix_v2.h
src/PotentialRho.h
src/ReportGamma2.h
src/ReportAcceptance.h
src/Update.h
src/PotentialSum.h
src/Report.h
src/PotentialR.h
src/UpdateXiGibbs.h
src/ReportTheta.h
src/ReportDelta.h
src/registerDynamicSymbol.c
src/UpdateTau2RhoNuMH.h
src/PotentialA.h
src/Update_v2.h
src/Cholesky.cpp
src/UpdateLMH.h
src/ReportL.h
src/Matrix_v2.cpp
src/ReportSigma2.h
src/Update_v2.cpp
src/UpdateRMH.h
src/PotentialDeltag.h
src/doc/xdeLIN.tex
src/doc/xdeLIN.pdf
data/expressionSetList.RData
data/xmcmc.RData
R/methods-matrix.R
R/AllGenerics.R
R/methods-XdeParameter.R
R/methods-ExpressionSetList.R
R/methods-XdeMcmc.R
R/zzz.R
R/methods-Parameters.R
R/methods-mergeExpressionSet.R
R/RUpdates.R
R/xde.R
R/AllClasses.R
R/methods-ExpressionSet.R
R/methods-data.frame.R
R/functions.R
vignettes/genomics.bib
vignettes/XDE.Rnw
vignettes/XdeParameterClass.Rnw
man/ExpressionSetList-class.Rd
man/ssStatistic.Rd
man/seed.Rd
man/empiricalStart.Rd
man/iterations.Rd
man/pairs.Rd
man/xde.Rd
man/studyCenter.Rd
man/zeroNu.Rd
man/burnin.Rd
man/tuning.Rd
man/output.Rd
man/geneCenter.Rd
man/posteriorAvg.Rd
man/firstMcmc.Rd
man/xmcmc.Rd
man/xsScores.Rd
man/ExpressionSetList-methods.Rd
man/calculatePosteriorAvg.Rd
man/lastMcmc.Rd
man/updates.Rd
man/XdeParameter-class.Rd
man/expressionSetList.Rd
man/XdeMcmc-class.Rd
man/standardizeSamples.Rd
man/hyperparameters.Rd
man/Parameters-class.Rd
man/symbolsInteresting.Rd
man/thin.Rd
tests/doRUnit.R
inst/CITATION
inst/Test/NAMESPACE
inst/Test/DESCRIPTION
inst/Test/src/Random_v2.h
inst/Test/src/UpdateTau2RMH.h
inst/Test/src/ReportT.h
inst/Test/src/UpdateRC2MH.h
inst/Test/src/Random.h
inst/Test/src/ReportA.h
inst/Test/src/PotentialDelta.h
inst/Test/src/UpdateTau2RhoMH.h
inst/Test/src/Rinterface_v2.cpp
inst/Test/src/ReportRho.h
inst/Test/src/UpdateC2Gibbs.h
inst/Test/src/ReportPotential.h
inst/Test/src/PotentialXqg.h
inst/Test/src/PotentialNu.h
inst/Test/src/UpdateBMH.h
inst/Test/src/ReportDiffexpressed.h
inst/Test/src/UpdateRhoGamma2MH.h
inst/Test/src/PotentialDDelta.h
inst/Test/src/Structure.cpp
inst/Test/src/UpdateAMH.h
inst/Test/src/UpdateSigma2MH.h
inst/Test/src/Potential_v2.cpp
inst/Test/src/ReportTau2Rho.h
inst/Test/src/PotentialPhiqg.h
inst/Test/src/PotentialXi.h
inst/Test/src/ReportXi.h
inst/Test/src/Utility_v2.cpp
inst/Test/src/diffExpressed_main.cpp
inst/Test/src/Random_v2.cpp
inst/Test/src/Matrix.h
inst/Test/src/ReportPhi.h
inst/Test/src/Utility_v2.h
inst/Test/src/PotentialSigma2.h
inst/Test/src/PotentialTau2.h
inst/Test/src/Potential.h
inst/Test/src/ReportTau2R.h
inst/Test/src/PotentialNug.h
inst/Test/src/Cholesky.h
inst/Test/src/PotentialDDeltag.h
inst/Test/src/mainTestHyper_v2.cpp
inst/Test/src/PotentialPhi.h
inst/Test/src/ReportR.h
inst/Test/src/UpdatePhiMH.h
inst/Test/src/UpdateTMH.h
inst/Test/src/UpdateRhoMH.h
inst/Test/src/UpdateTau2RDDeltaMH.h
inst/Test/src/ReportLambda.h
inst/Test/src/Potential_v2.h
inst/Test/src/ReportC2.h
inst/Test/src/PotentialX.h
inst/Test/src/PotentialSigma2qg.h
inst/Test/src/UpdateDeltaMH.h
inst/Test/src/Structure.h
inst/Test/src/PotentialFunction.h
inst/Test/src/ReportProbDelta.h
inst/Test/src/ReportDDelta.h
inst/Test/src/PotentialB.h
inst/Test/src/PotentialZero.h
inst/Test/src/UpdateMultiplicativePositive.h
inst/Test/src/ReportB.h
inst/Test/src/UpdateGamma2Gibbs.h
inst/Test/src/UpdateThetaMH.h
inst/Test/src/ReportNu.h
inst/Test/src/UpdateLambdaMH.h
inst/Test/src/Matrix_v2.h
inst/Test/src/PotentialRho.h
inst/Test/src/ReportGamma2.h
inst/Test/src/ReportAcceptance.h
inst/Test/src/Update.h
inst/Test/src/PotentialSum.h
inst/Test/src/Report.h
inst/Test/src/PotentialR.h
inst/Test/src/UpdateXiGibbs.h
inst/Test/src/ReportTheta.h
inst/Test/src/ReportDelta.h
inst/Test/src/UpdateTau2RhoNuMH.h
inst/Test/src/PotentialA.h
inst/Test/src/Update_v2.h
inst/Test/src/Cholesky.cpp
inst/Test/src/UpdateLMH.h
inst/Test/src/ReportL.h
inst/Test/src/Matrix_v2.cpp
inst/Test/src/ReportSigma2.h
inst/Test/src/Update_v2.cpp
inst/Test/src/UpdateRMH.h
inst/Test/src/PotentialDeltag.h
inst/Test/R/zzz.R
inst/Test/R/initializeParams.R
inst/Test/vignettes/callC.R
inst/Test/man/Test-package.Rd
inst/doc/XdeParameterClass.R
inst/doc/XDE.Rnw
inst/doc/XdeParameterClass.pdf
inst/doc/XDE.R
inst/doc/XdeParameterClass.Rnw
inst/doc/XDE.pdf
inst/scripts/ModelA_B.R
inst/scripts/v2Interface.R
inst/scripts/ModelC_D.R
inst/scripts/ModelI_II.R
inst/logFiles/lambda.log
inst/logFiles/tau2Rho.log
inst/logFiles/b.log
inst/logFiles/BES.rda
inst/logFiles/a.log
inst/logFiles/theta.log
inst/logFiles/c2.log
inst/logFiles/postAvg.rda
inst/logFiles/gamma2.log
inst/logFiles/xi.log
inst/logFiles/r.log
inst/logFiles/rho.log
inst/logFiles/t.log
inst/logFiles/l.log
inst/logFiles/tau2R.log
inst/unitTests/Makefile
