Files in alevinQC

Generate QC Reports For Alevin Output

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/plotAlevinHistogram.R R/alevinQCReport.R R/plotAlevinKneeNbrGenes.R R/plotAlevinBarcodeCollapse.R R/readAlevinQC.R R/plotAlevinQuantPairs.R R/plotAlevinKneeRaw.R R/alevinQC-pkg.R R/checkAlevinInputFiles.R R/alevinQCShiny.R R/plotAlevinQuant.R

inst/doc/alevinqc.html

inst/doc/alevinqc.Rmd inst/doc/alevinqc.R inst/extdata/alevin_report_template.Rmd

inst/extdata/alevinQC_screenshot2.png

inst/extdata/alevinQC_screenshot1.png

inst/extdata/alevin_example_v0.14/cmd_info.json

inst/extdata/alevin_example_v0.14/lib_format_counts.json

inst/extdata/alevin_example_v0.14/aux_info/meta_info.json

inst/extdata/alevin_example_v0.14/aux_info/alevin_meta_info.json

inst/extdata/alevin_example_v0.14/alevin/whitelist.txt

inst/extdata/alevin_example_v0.14/alevin/featureDump.txt

inst/extdata/alevin_example_v0.14/alevin/raw_cb_frequency.txt

inst/extdata/alevin_example_pre0.14/cmd_info.json

inst/extdata/alevin_example_pre0.14/lib_format_counts.json

inst/extdata/alevin_example_pre0.14/aux_info/meta_info.json

inst/extdata/alevin_example_pre0.14/alevin/whitelist.txt

inst/extdata/alevin_example_pre0.14/alevin/quants_mat_rows.txt

inst/extdata/alevin_example_pre0.14/alevin/filtered_cb_frequency.txt

inst/extdata/alevin_example_pre0.14/alevin/quants_mat_cols.txt

inst/extdata/alevin_example_pre0.14/alevin/quants_mat.gz

inst/extdata/alevin_example_pre0.14/alevin/MappedUmi.txt

inst/extdata/alevin_example_pre0.14/alevin/featureDump.txt

inst/extdata/alevin_example_pre0.14/alevin/raw_cb_frequency.txt

inst/extdata/alevin_example_pre0.14/alevin/predictions.txt

build/vignette.rds

tests/testthat.R tests/testthat/test-alevin-v0.14.R tests/testthat/test-alevin-pre0.14.R

vignettes/bibliography.bib

vignettes/alevinqc.Rmd man/plotAlevinQuant.Rd man/checkAlevinInputFiles.Rd man/plotAlevinBarcodeCollapse.Rd man/readAlevinQC.Rd man/alevinQCReport.Rd man/plotAlevinHistogram.Rd man/plotAlevinKneeNbrGenes.Rd man/plotAlevinQuantPairs.Rd man/alevinQC-pkg.Rd man/alevinQCShiny.Rd man/plotAlevinKneeRaw.Rd

alevinQC documentation built on Feb. 4, 2021, 2:01 a.m.