alevinQCShiny: Generate alevin summary shiny app
In alevinQC: Generate QC Reports For Alevin Output

Description Usage Arguments Value Author(s) Examples

Generate a shiny app summarizing the main aspects of an alevin quantification run. The app generation assumes that alevin has been run with the –dumpFeatures flag to generate the necessary output files.

1	alevinQCShiny(baseDir, sampleId, customCBList = list())

`baseDir`	Path to the output directory from the alevin run (should be the directory containing the `alevin` directory).
`sampleId`	Sample ID, will be used set the title for the app.
`customCBList`	Named list with custom set(s) of barcodes to provide summary statistics/plots for, in addition to the whitelists generated by alevin.

A shiny app.

Charlotte Soneson

app <- alevinQCShiny(baseDir = system.file("extdata/alevin_example_v0.14",
                                           package = "alevinQC"),
                     sampleId = "example")
if (interactive()) {
    shiny::runApp(app)
}