plotAlevinKneeRaw: Knee plot of raw cell barcode frequencies
In alevinQC: Generate QC Reports For Alevin Output

Description Usage Arguments Value Author(s) Examples

Plot the raw cell barcode frequencies in decreasing order, and indicate a predetermined breakpoint (indicating barcodes included in the original whitelist) using color as well as a label.

1	plotAlevinKneeRaw(cbTable)

cbTable

data.frame with raw barcode frequencies (such as the cbTable returned by readAlevinQC).

A ggplot object

Charlotte Soneson

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alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinKneeRaw(alevin$cbTable)