plotAlevinHistogram: Histogram of selected summary statistic

In alevinQC: Generate QC Reports For Alevin Output

Description

Histogram of selected summary statistic

Usage

plotAlevinHistogram(
  cbTable,
  plotVar = "dedupRate",
  axisLabel = plotVar,
  colName = "inFinalWhiteList",
  cbName = "final whitelist"
)

Arguments

cbTable	data.frame (such as the cbTable returned by readAlevinQC) containing the desired summary statistic in a column.
plotVar	Character scalar giving the name of a numeric column of cbTable to plot.
axisLabel	Character scalar giving the label of the selected statistic (will be displayed as the axis label in the plot).
colName	Character scalar giving the name of a logical column of cbTable to use for filling the bars in the histogram.
cbName	Character scalar giving the name of the set of barcodes defined by colName, used for labelling the plot legend.

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinHistogram(alevin$cbTable, plotVar = "dedupRate",
                    axisLabel = "Deduplication rate",
                    colName = "inFinalWhiteList",
                    cbName = "final whitelist")

alevinQC documentation built on Feb. 4, 2021, 2:01 a.m.