plotAlevinBarcodeCollapse: Summary plot of cell barcode collapsing
In alevinQC: Generate QC Reports For Alevin Output
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/plotAlevinBarcodeCollapse.R
Description
Plot the original frequency of each cell barcode in the original whitelist
against the frequency after collapsing similar cell barcodes.
Usage
1
plotAlevinBarcodeCollapse(cbTable)
Arguments
cbTable
data.frame (such as the cbTable returned by
readAlevinQC) with barcode frequencies before and after collapsing.
Value
A ggplot object
Author(s)
Charlotte Soneson
Examples
1
2
3
alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
package = "alevinQC"))
plotAlevinBarcodeCollapse(alevin$cbTable)
alevinQC documentation built on Feb. 4, 2021, 2:01 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/plotAlevinBarcodeCollapse.R
Description
Plot the original frequency of each cell barcode in the original whitelist against the frequency after collapsing similar cell barcodes.
Usage
1 | plotAlevinBarcodeCollapse(cbTable)
|
Arguments
cbTable |
|
Value
A ggplot object
Author(s)
Charlotte Soneson
Examples
1 2 3 | alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
package = "alevinQC"))
plotAlevinBarcodeCollapse(alevin$cbTable)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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