ballgown: Flexible, isoform-level differential expression analysis

Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.

Package details

AuthorJack Fu [aut], Alyssa C. Frazee [aut, cre], Leonardo Collado-Torres [aut], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]
Bioconductor views DifferentialExpression ImmunoOncology Preprocessing RNASeq StatisticalMethod
MaintainerJack Fu <jmfu@jhsph.edu>
LicenseArtistic-2.0
Version2.22.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ballgown")

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ballgown documentation built on Nov. 8, 2020, 5:46 p.m.