H9state23unmeth.hg19: H9state23unmeth.hg19

Description Usage Details


Hypermethylated targets in bivalent histone sites from H9 embryonic stem cells which were unmethylated across normal cells for hg19 genome


data(H9state23unmeth.hg19, package="biscuiteer")


GRanges was generated by taking the HMM-derived CpG islands (described in ?HMM_CpG_islands.hg19) and overlapping with regions that were unmethylated in normal H9 stem cells and had a ChromHMM state of 2 or 3 (see https://www.nature.com/articles/nmeth.1906#MOESM194 for a description of ChromHMM) Return type: GRanges

biscuiteer documentation built on Nov. 8, 2020, 8:28 p.m.