biscuiteer-package: Convenience Functions for Biscuit

In biscuiteer: Convenience Functions for Biscuit

Description

A test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples (with or without imputation, dropping mostly-NA rows, age estimates, etc.)

Author(s)

Timothy J Triche Jr [e-mail], Wanding Zhou [e-mail], Ben Johnson [e-mail], Jacob Morrison [e-mail], Lyong Heo [e-mail]

See Also

Useful links:

• https://github.com/trichelab/biscuiteer

• Report bugs at https://github.com/trichelab/biscuiteer/issues

Examples

  orig_bed <- system.file("extdata", "MCF7_Cunha_chr11p15.bed.gz",
                          package="biscuiteer")
  orig_vcf <- system.file("extdata", "MCF7_Cunha_header_only.vcf.gz",
                          package="biscuiteer")
  bisc <- readBiscuit(BEDfile = orig_bed, VCFfile = orig_vcf,
                      merged = FALSE)

biscuiteer documentation built on Nov. 8, 2020, 8:28 p.m.