Description Usage Arguments Value Examples
View source: R/simplifySampleNames.R
Tries using the longest common subsequence to figure out what can be dropped. Usually used for VCF columns.
1 |
x |
A SummarizedExperiment-derived object, or a character vector |
The input object, but with simplified sample names
1 2 3 4 5 6 7 8 | orig_bed <- system.file("extdata", "MCF7_Cunha_chr11p15.bed.gz",
package="biscuiteer")
orig_vcf <- system.file("extdata", "MCF7_Cunha_header_only.vcf.gz",
package="biscuiteer")
bisc <- readBiscuit(BEDfile = orig_bed, VCFfile = orig_vcf,
merged = FALSE)
bisc <- simplifySampleNames(bisc)
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