H9state23unmeth.hg38: H9state23unmeth.hg38
In biscuiteer: Convenience Functions for Biscuit
Description
Hypermethylated targets in bivalent histone sites from H9 embryonic stem
cells which were unmethylated across normal cells for hg38 genome
Usage
1
data(H9state23unmeth.hg38, package="biscuiteer")
Details
GRanges was generated by taking the HMM-derived CpG islands (described in
?HMM_CpG_islands.hg38) and overlapping with regions that were unmethylated in
normal H9 stem cells and had a ChromHMM state of 2 or 3 (see
https://www.nature.com/articles/nmeth.1906#MOESM194 for a description of
ChromHMM)
Return type: GRanges
biscuiteer documentation built on Nov. 8, 2020, 8:28 p.m.
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Description
Hypermethylated targets in bivalent histone sites from H9 embryonic stem cells which were unmethylated across normal cells for hg38 genome
Usage
1 | data(H9state23unmeth.hg38, package="biscuiteer")
|
Details
GRanges was generated by taking the HMM-derived CpG islands (described in ?HMM_CpG_islands.hg38) and overlapping with regions that were unmethylated in normal H9 stem cells and had a ChromHMM state of 2 or 3 (see https://www.nature.com/articles/nmeth.1906#MOESM194 for a description of ChromHMM) Return type: GRanges
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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