Description Usage Arguments Value See Also Examples
Reverse of grToSeg
1 |
seg |
The .seg filename |
genome |
Genome against which segments were annotated (DEFAULT: "hg19") |
name |
.seg file column to use as $name metadata (DEFAULT: "ID") |
score |
.seg file column to use as $score metadata (DEFAULT: "seg.mean") |
1 | A GRanges object
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grToSeg
1 2 3 4 5 6 7 | clock <- getClock(model="horvathshrunk", genome="hg38")
gr <- clock$gr
df <- grToSeg(gr = gr, file = "test_grToSeg.seg")
segs <- segToGr("test_grToSeg.seg", genome="hg38")
if (file.exists("test_grToSeg.seg")) file.remove("test_grToSeg.seg")
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