basis-set: Generics for basis matrix assignment

In ccfindR: Cancer Clone Finder

Description

Access and modify basis matrices

Usage

basis(object) <- value

Arguments

object	Object of class scNMFSet
value	Basis matrix to be substituted

Value

Input object with updated basis matrices

Examples

set.seed(1)
s <- scNMFSet(count=matrix(rpois(n=12,lambda=3),4,3))
s <- vb_factorize(s, ranks=3)
basis(s)[[1]] <- apply(basis(s)[[1]],seq(1,2),round,digits=3)
basis(s)

ccfindR documentation built on Nov. 8, 2020, 5:12 p.m.