ranks: Rank values in an Object

In ccfindR: Cancer Clone Finder

Description

Retrieve or set the rank values in an object

Usage

ranks(object)

Arguments

object

Object of class scNMFSet.

Details

Ranks for which factorization has been performed are stored in slot ranks of scNMFSet object. ranks(object) will return the rank vector. ranks(object) <- value can be used to modify it.

Value

Either NULL or vector.

Examples

s <- scNMFSet(matrix(rpois(n=12,lambda=3),4,3))
s <- vb_factorize(s,ranks=seq(2,4))
ranks(s)

ccfindR documentation built on Nov. 8, 2020, 5:12 p.m.