plot_tree: Plot cluster tree
In ccfindR: Cancer Clone Finder

Description Usage Arguments Details Value Examples

Visualize the output of build_tree as a dendrogram.

1	plot_tree(tree, direction = "rightwards", cex = 0.7, ...)

`tree`	List containing tree structure. Output from `build_tree`
`direction`	`c('rightwards','downwards')`; the direction of dendrogram
`cex`	Font size of edge/tip labels
`...`	Other parameters to `plot.phylo`

Uses plot.phylo to visualize cluster tree.

NULL

set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
tree <- build_tree(s,rmax=5)
plot_tree(tree)