Files in ccfindR

Cancer Clone Finder

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

build/partial.rdb

src/RcppExports.cpp

src/vbnmf_update.cpp

src/Makevars

R/RcppExports.R R/utils.R R/tree.R R/bayesian.R R/factorize.R R/scNMF_class.R R/utils2.R R/ccfindR.R R/gsea.R vignettes/ccfindR.Rmd

vignettes/nature.csl

vignettes/scRNA.bib

man/subset-methods.Rd man/cell_map.Rd man/gene_map.Rd man/colData-scNMFSet-method.Rd man/visualize_clusters.Rd man/feature_map.Rd man/measure-set-scNMFSet-method.Rd man/plot_genes.Rd man/counts-scNMFSet-method.Rd man/optimal_rank.Rd man/measure-set.Rd man/colData-set-scNMFSet-ANY-method.Rd man/dbasis.Rd man/counts-set-scNMFSet-method.Rd man/basis.Rd man/meta_genes.Rd man/coeff-scNMFSet-method.Rd man/scNMFSet-class.Rd man/ranks.Rd man/basis-set-scNMFSet-method.Rd man/newick.Rd man/dcoeff.Rd man/dbasis-set.Rd man/dcoeff-set.Rd man/coeff.Rd man/measure-scNMFSet-method.Rd man/dbasis-scNMFSet-method.Rd man/meta_gene.cv.Rd man/rowData-scNMFSet-method.Rd man/ranks-set.Rd man/dcoeff-set-scNMFSet-method.Rd man/ranks-scNMFSet-method.Rd man/ccfindR.Rd man/write_10x.Rd man/cluster_id.Rd man/rowData-set-scNMFSet-method.Rd man/coeff-set-scNMFSet-method.Rd man/assignCelltype.Rd man/normalize_count.Rd man/write_meta.Rd man/coeff-set.Rd man/measure.Rd man/filter_cells.Rd man/plot_tree.Rd man/remove_zeros.Rd man/factorize.Rd man/dbasis-set-scNMFSet-method.Rd man/read_10x.Rd man/rename_tips.Rd man/vb_factorize.Rd man/simulate_whx.Rd man/basis-scNMFSet-method.Rd man/dcoeff-scNMFSet-method.Rd man/ranks-set-scNMFSet-method.Rd man/filter_genes.Rd man/basis-set.Rd man/build_tree.Rd man/simulate_data.Rd man/show-scNMFSet-method.Rd man/scNMFSet.Rd

inst/REFERENCES.bib

inst/doc/ccfindR.Rmd

inst/doc/ccfindR.html

inst/doc/ccfindR.R

inst/extdata/barcodes.tsv

inst/extdata/matrix.mtx

inst/extdata/genes.tsv

ccfindR documentation built on Nov. 8, 2020, 5:12 p.m.