write_10x: Write 10x data files

In ccfindR: Cancer Clone Finder

Description

Use an object and write count and annotation files in 10x format.

Usage

write_10x(object, dir, count = "matrix.mtx", genes = "genes.tsv",
  barcodes = "barcodes.tsv", quote = FALSE)

Arguments

object	Object of class scNMFSet containing count data
dir	Directory where files are to be written.
count	File name for count matrix.
genes	File name for gene annotation.
barcodes	File name for cell annotation.
quote	Suppress quotation marks in output files.

Value

NULL

Examples

set.seed(1)
x <- matrix(rpois(n=12,lambda=3),4,3)
rownames(x) <- seq_len(4)
colnames(x) <- seq_len(3)
s <- scNMFSet(count=x,rowData=seq_len(4),colData=seq_len(3))
write_10x(s,dir='.')

ccfindR documentation built on Nov. 8, 2020, 5:12 p.m.