cluster_id: Assign cells into clusters

Description Usage Arguments Value Examples

View source: R/utils.R

Description

Use factorization results in an object to assign cells into clusters.

Usage

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cluster_id(object, rank = 2)

Arguments

object

Object of class scNMFSet

rank

Rank value whose factor matrices are to be used for assignment.

Value

Vector of length equal to the number of cells containing cluster ID numbers of each cell.

Examples

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set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(count=x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
cid <- cluster_id(s, rank=5)
table(cid)

ccfindR documentation built on Nov. 8, 2020, 5:12 p.m.