cluster_id: Assign cells into clusters
In ccfindR: Cancer Clone Finder
Description
Usage
Arguments
Value
Examples
Description
Use factorization results in an object to assign cells into clusters.
Usage
1
cluster_id(object, rank = 2)
Arguments
object
Object of class scNMFSet
rank
Rank value whose factor matrices are to be used for
assignment.
Value
Vector of length equal to the number of cells containing
cluster ID numbers of each cell.
Examples
1
2
3
4
5
6
set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(count=x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
cid <- cluster_id(s, rank=5)
table(cid)
ccfindR documentation built on Nov. 8, 2020, 5:12 p.m.
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Description Usage Arguments Value Examples
Description
Use factorization results in an object to assign cells into clusters.
Usage
1 | cluster_id(object, rank = 2)
|
Arguments
object |
Object of class |
rank |
Rank value whose factor matrices are to be used for assignment. |
Value
Vector of length equal to the number of cells containing cluster ID numbers of each cell.
Examples
1 2 3 4 5 6 | set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(count=x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
cid <- cluster_id(s, rank=5)
table(cid)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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