| annotate | Annotates the reagents (probes) of a cellHTS object |
| batch | Access and replace the batch information of a cellHTS object |
| bdgpbiomart | Dataset with annotation of CG identifiers |
| Bscore | B score normalization |
| buildCellHTS2 | Build a cellHTS2 object from a data frame containing... |
| cellHTS2 | cellHTS2 Package Overview |
| cellHTS-class | A class for data from cell-based high-throughput assays... |
| configurationAsScreenPlot | Screen plot of the plate configuration of a cellHTS object |
| configure | Configures the plates and plate result files |
| convertOldCellHTS | Convert an old S3 class cellHTS object to the new S4 class... |
| convertWellCoordinates | Converts different well identifiers |
| Data | Access and replace the assayData slot of a cellHTS object |
| data-dualCh | A sample cellHTS object containing dual channel data |
| data-KcViab | A sample cellHTS object - D. melanogaster genome-wide RNAi... |
| data-KcViabSmall | A sample cellHTS object - D. melanogaster genome-wide RNAi... |
| data-oldKcViabSmall | A sample S3 class cellHTS object - D. melanogaster... |
| getDynamicRange | Per-plate dynamic range of a cellHTS object |
| getEnVisionRawData | Read a plate file obtain from EnVision Plate Reader |
| getMeasureRepAgreement | Measures of agreement between plate replicates from a cellHTS... |
| getTopTable | Generate the hit list from a scored cellHTS object |
| getZfactor | Per-experiment Z'-factor of a cellHTS object |
| gseaModule | Constructor for an object of class gseaModule |
| imageScreen | Experiment-wide quality control plot of a cellHTS object |
| intensityFiles | Retrieve the contents of the input files used to generate a... |
| normalizePlates | Per-plate data transformation, normalization and variance... |
| oneRowPerId | Rearrange dataframe entries such that there is exactly one... |
| plate | Retrieve information related with the format of a RNAi... |
| plateEffects | Access plate effects stored in a cellHTS object. |
| plotSpatialEffects | Plate plot with the row and column offsets estimated by the a... |
| readHTAnalystData | Read a set of plate results obtained from a HTanalyser plate... |
| readPlateList | Read a collection of plate reader data files |
| ROC | Creates an object of class "ROC" which can be plotted as a... |
| ROC-class | Class that contain data that can be plotted as a ROC curve. |
| rsa | Perform RSA ranking on the screening results. |
| scoreReplicates | Scores normalized replicate values given in a cellHTS object |
| scores2calls | Sigmoidal transformation of the score values stored in a... |
| setSettings | cellHTS2 HTML report settings |
| spatialNormalization | Spatial normalization |
| state | Retrieve the state of a cellHTS object. |
| summarizeChannels | Summarization of dual-channel data |
| summarizeReplicates | Summarize between scored replicate values given in a cellHTS... |
| templateDescriptionFile | Creates a template description file for an RNAi experiment |
| updateCellHTS | Update old serialized cellHTS objects. |
| wellAnno | Access the annotation from a cellHTS object. |
| writeReport | Create a directory with HTML pages of linked tables and plots... |
| writeTab | Write the data from a cellHTS object to a tab-delimited file |
| write.tabdel | Wrapper to function 'write.table' used to write data to a... |
