API for clusterProfiler
statistical analysis and visualization of functional profiles for genes and gene clusters
| Global functions | |
|---|---|
| %<>% | Man page |
| %>% | Man page |
| .onAttach | Source code |
| DataSet | Man page |
| GI2EG | Source code |
| GSEA | Man page Source code |
| Gff2GeneTable | Man page Source code |
| KEGG_convert | Source code |
| KEGG_path2extid | Man page |
| `[.compareClusterResult` | Source code |
| `[[.compareClusterResult` | Source code |
| add_GO_Ontology | Source code |
| arrange | Man page |
| arrange.compareClusterResult | Source code |
| arrange.enrichResult | Source code |
| as.data.frame.groupGOResult | Source code |
| bitr | Man page Source code |
| bitr_kegg | Man page Source code |
| browseKEGG | Man page Source code |
| buildGOmap | Man page Source code |
| clusterProfiler | Man page |
| clusterProfiler-package | Man page |
| cnetplot | Man page |
| compareCluster | Man page Source code |
| dim.compareClusterResult | Source code |
| dotplot | Man page |
| download.KEGG.Path | Source code |
| download_KEGG | Man page Source code |
| dropGO | Man page Source code |
| emapplot | Man page |
| enrichDAVID | Man page Source code |
| enrichGO | Man page Source code |
| enrichKEGG | Man page Source code |
| enrichMKEGG | Man page Source code |
| enrichWP | Man page Source code |
| enricher | Man page Source code |
| excludeGOlevel | Source code |
| excludeGOterm | Source code |
| filter | Man page |
| filter.compareClusterResult | Source code |
| filter.enrichResult | Source code |
| gcSample | Man page |
| geneID | Man page |
| geneID.groupGOResult | Source code |
| geneInCategory | Man page |
| geneInCategory.groupGOResult | Source code |
| getGOLevel | Source code |
| get_GO2Ontology_table | Source code |
| get_GO2TERM_table | Source code |
| get_GOTERM | Source code |
| get_GO_data | Source code |
| get_KEGG_Env | Source code |
| get_go_ontology | Source code |
| get_kegg_species | Source code |
| get_species_name | Source code |
| get_species_name_idx | Source code |
| get_wp_data | Source code |
| get_wp_gmtfile | Source code |
| get_wp_organisms | Man page Source code |
| go2ont | Man page Source code |
| go2term | Man page Source code |
| gofilter | Man page Source code |
| goplot | Man page |
| groupGO | Man page Source code |
| groupGOResult-class | Man page |
| group_by | Man page |
| group_by.compareClusterResult | Source code |
| group_by.enrichResult | Source code |
| gseGO | Man page Source code |
| gseKEGG | Man page Source code |
| gseMKEGG | Man page Source code |
| gseWP | Man page Source code |
| gseaplot | Man page |
| gsfilter | Man page |
| head.compareClusterResult | Source code |
| heatplot | Man page |
| idType | Man page Source code |
| keepGOlevel | Source code |
| keepGOterm | Source code |
| kegg_rest | Source code |
| kegg_species | Man page |
| kegg_species_data | Source code |
| ko2name | Man page |
| merge_result | Man page |
| mutate | Man page |
| mutate.compareClusterResult | Source code |
| mutate.enrichResult | Source code |
| mydownload | Source code |
| n | Man page |
| parseEmbl | Source code |
| parseEmblItem | Source code |
| plotGOgraph | Man page Source code |
| prepare_KEGG | Source code |
| prepare_WP_data | Source code |
| read.gmt | Man page Source code |
| read.gmt.wp | Man page Source code |
| readGff | Source code |
| reexports | Man page |
| removeEmptyEntry.list | Source code |
| rename | Man page |
| rename.compareClusterResult | Source code |
| rename.enrichResult | Source code |
| ridgeplot | Man page |
| search_kegg_organism | Man page Source code |
| select | Man page |
| select.compareClusterResult | Source code |
| select.enrichResult | Source code |
| setReadable | Man page |
| show,groupGOResult-method | Man page |
| simplify | Man page |
| simplify,compareClusterResult-method | Man page |
| simplify,enrichResult-method | Man page |
| simplify,gseaResult-method | Man page |
| simplify_internal | Source code |
| slice | Man page |
| slice.compareClusterResult | Source code |
| slice.enrichResult | Source code |
| summarise | Man page |
| summarise.compareClusterResult | Source code |
| summarise.enrichResult | Source code |
| tail.compareClusterResult | Source code |
| uniprot_get | Man page Source code |
| viewKEGG | Man page |
