cmapR: CMap Tools in R

The Connectivity Map (CMap) is a massive resource of perturbational gene expression profiles built by researchers at the Broad Institute and funded by the NIH Library of Integrated Network-Based Cellular Signatures (LINCS) program. Please visit https://clue.io for more information. The cmapR package implements methods to parse, manipulate, and write common CMap data objects, such as annotated matrices and collections of gene sets.

Package details

AuthorTed Natoli [aut, cre] (<https://orcid.org/0000-0002-0953-0206>)
Bioconductor views DataImport DataRepresentation GeneExpression
MaintainerTed Natoli <ted.e.natoli@gmail.com>
Licensefile LICENSE
Version1.2.1
URL https://github.com/cmap/cmapR
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cmapR")

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cmapR documentation built on Dec. 12, 2020, 2 a.m.