runDiff: Calculate differential expression markers

Description Usage Arguments Value See Also Examples

View source: R/runDiff.R

Description

Calculating differentially expressed markers

Usage

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runDiff(object, branch.id = NULL, branch.id.2 = NULL, verbose = FALSE)

Arguments

object

an FSPY object

branch.id

vector. Branch ids use to run differentially expressed markers

branch.id.2

vector. Branch ids use to run differentially expressed markers in compare with branch.id

verbose

logic. Whether to print calculation progress.

Value

An FSPY object with cluster.id in meta.data

a data.frame with differential expressed markers

See Also

bulidTree

Examples

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if (FALSE) {

DEG.table <- runDiff(fspy)

}

flowSpy documentation built on Nov. 8, 2020, 6:53 p.m.