subsetFSPY: subset FSPY object

In flowSpy: A Toolkit for Flow And Mass Cytometry Data

Description

This subsets an FSPY object by given a list of cells or cluster id. This function will subset all results without recalculating them, such as knn, PCA, tSNE, umap and pseudotime. For instance, you can choose recalculate PCA and tSNE and destiny scores by paramter recalculate.

Usage

subsetFSPY(object, cells = NULL, knn = NA, verbose = FALSE)

Arguments

object	An FSPY object
cells	vector, Names of the cells to retain.
knn	numeric. If is NA, the KNN will be equal to the knn number in the input FSPY object.
verbose	logic. Whether to print calculation progress.

Value

An FSPY object

Examples

if (FALSE) {

cells <- test.meta.data$cell[which(test.meta.data$stage == "D0")]
sub.fspy <- subsetFSPY(fspy, cells = cells)
sub.fspy

}

flowSpy documentation built on Nov. 8, 2020, 6:53 p.m.