API for flowSpy
A Toolkit for Flow And Mass Cytometry Data

Global functions
.onAttach	Source code
FSPY	Man page
FSPY-class	Man page
FSPY-class,	Man page
FSPYclass,	Man page
Rphenograph	Man page Source code
applyComp	Source code
autoLgcl	Source code
buildTree	Man page Source code
combine.probs	Source code
constraintMatrix	Man page Source code
correctBatchFSPY	Man page Source code
createFSPY	Man page Source code
cytofAsinh	Source code
d.dx.sigmoid	Source code
defLeafCells	Man page Source code
defRootCells	Man page Source code
fetchCell	Man page Source code
fetchClustMeta	Man page Source code
fetchPlotMeta	Man page Source code
find_neighbors	Man page Source code
flowSpy	Man page
flowSpy-package	Man page
gatingMatrix	Man page Source code
inv.logistic	Source code
inv.sigmoid	Source code
jaccard_coeff	Source code
logistic	Source code
mean.of.logs	Source code
mean.of.logs.pos	Source code
mean.pos	Source code
num.mean	Source code
plot2D	Man page Source code
plot3D	Man page Source code
plotBranchHeatmap	Man page Source code
plotCluster	Man page Source code
plotClusterHeatmap	Man page Source code
plotHeatmap	Man page Source code
plotMarkerDensity	Man page Source code
plotPieCluster	Man page Source code
plotPieTree	Man page Source code
plotPseudotimeDensity	Man page Source code
plotPseudotimeTraj	Man page Source code
plotTrajHeatmap	Man page Source code
plotTree	Man page Source code
plotViolin	Man page Source code
pmax.abs	Source code
preference	Source code
processingCluster	Man page Source code
prop.exp	Source code
prop.nonexp	Source code
runClara	Man page Source code
runCluster	Man page Source code
runDiff	Man page Source code
runDiffusionMap	Man page Source code
runExprsExtract	Man page Source code
runExprsMerge	Man page Source code
runFastPCA	Man page Source code
runHclust	Man page Source code
runKNN	Man page Source code
runKmeans	Man page Source code
runMclust	Man page Source code
runPhenograph	Man page Source code
runPseudotime	Man page Source code
runSOM	Man page Source code
runTSNE	Man page Source code
runUMAP	Man page Source code
runWalk	Man page Source code
scaleData	Source code
show,	Man page
show,FSPY-method	Man page
show-method	Man page
sigmoid	Source code
subsetFSPY	Man page Source code
sum.of.logs	Source code
updateClustMeta	Man page Source code
updatePlotMeta	Man page Source code