plotTrajHeatmap: Visualization heatmap of intermediate cells of FSPY

In flowSpy: A Toolkit for Flow And Mass Cytometry Data

Description

Visualization heatmap of intermediate cells of FSPY

Usage

plotTrajHeatmap(
  object,
  cutoff = 0,
  markers = NULL,
  color = colorRampPalette(c("blue", "white", "red"))(100),
  scale = "row",
  ...
)

Arguments

object	An FSPY object
cutoff	numeric. value to identify intermediate state cells
markers	markers to plot on the heatmap
color	vector. Colors used in heatmap.
scale	character. Whether the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none"
...	options to pass on to the pheatmap function.

Value

ggplot2 figure

Examples

if (FALSE) {

plotTrajHeatmap(fspy)
plotBranchHeatmap(fspy, color = colorRampPalette(c("purple","white","yellow"))(100))
plotBranchHeatmap(fspy, cluster_row = FALSE)
plotBranchHeatmap(fspy, cluster_row = FALSE, cluster_col = FALSE)

}

flowSpy documentation built on Nov. 8, 2020, 6:53 p.m.