Files in geNetClassifier
Classify diseases and build associated gene networks using gene expression profiles
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/datalist
data/geneSymbols.RData
data/leukemiasClassifier.RData
R/class.GenesNetwork.R
R/class.GeneralizationError.R
R/class.GenesRanking.R
R/functions.private.R
R/class.GeNetClassifierReturn.R
R/functions.public.R
R/function.main.R
vignettes/Fig4-5geneSelection.pdf
vignettes/Fig12plotNtwAML30g.png
vignettes/Fig13plotNtwAML100g.pdf
vignettes/Fig2significantGeneswithoutNoL.pdf
vignettes/Fig3overlap.png
vignettes/Fig6leukemiasClassifierAssingorNotAssing.pdf
vignettes/Fig1intro.png
vignettes/Fig8expressionProfilePlot_2g.pdf
vignettes/Fig11plotNtwALL9g.png
vignettes/Fig7significantGenes.pdf
vignettes/Fig9expressionProfilePlot_B.pdf
vignettes/geNetClassifier-vignette.Rnw
man/plotNetwork.Rd
man/queryGeNetClassifier.Rd
man/genesDetails-methods.Rd
man/plot.GeNetClassifierReturn.Rd
man/numSignificantGenes-methods.Rd
man/plotAssignments.Rd
man/plotExpressionProfiles.Rd
man/GenesNetwork-class.Rd
man/gClasses-methods.Rd
man/getSubNetwork-methods.Rd
man/querySummary.Rd
man/geNetClassifier.Rd
man/GeNetClassifierReturn-class.Rd
man/geNetClassifier-package.Rd
man/getTopRanking-methods.Rd
man/GenesRanking-class.Rd
man/getEdges-methods.Rd
man/numGenes-methods.Rd
man/GeneralizationError-class.Rd
man/geneSymbols.Rd
man/externalValidation.probMatrix.Rd
man/plotDiscriminantPower.Rd
man/calculateGenesRanking.Rd
man/overview-methods.Rd
man/getRanking-methods.Rd
man/getNumEdges-methods.Rd
man/plot.GenesRanking.Rd
man/getNodes-methods.Rd
man/setProperties-methods.Rd
man/leukemiasClassifier.Rd
man/network2txt.Rd
man/getNumNodes-methods.Rd
man/externalValidation.stats.Rd
tests/runTests.R
inst/CITATION
inst/doc/geNetClassifier-vignette.pdf
inst/doc/geNetClassifier-vignette.R
inst/doc/geNetClassifier-vignette.Rnw
inst/unitTests/test_externalValidationStats.R
inst/unitTests/test_plotExpressionProfiles.R
inst/unitTests/test_geNetClassifier.R
