overview-methods: Overview

In geNetClassifier: Classify diseases and build associated gene networks using gene expression profiles

Description

Provides an overview of all the slots in the object.

Methods

It can be applied to the following classes:

signature(object = "GenesNetwork")

signature(object = "GenesRanking")

signature(object = "GeNetClassifierReturn")

signature(object = "GeneralizationError")

See Also

Main package function and classifier training: geNetClassifier
This method's classes help pages:
GenesRanking
GenesNetwork
GeNetClassifierReturn
GeneralizationError

Examples

data(leukemiasClassifier)
# geNetClassifier return:
overview(leukemiasClassifier)
# Generalization Error and stats estimated by cross-validation:
overview(leukemiasClassifier@generalizationError)
# A GenesNetwork:
# (a class has to be selected, otherwise it is a list)
overview(leukemiasClassifier@genesNetwork$ALL)

# For a GenesRanking,  we recommend to use genesDetails() instead:
genesDetails(leukemiasClassifier@classificationGenes)$AML

geNetClassifier documentation built on Nov. 8, 2020, 4:53 p.m.