getSubNetwork-methods: Get a sub-network.

In geNetClassifier: Classify diseases and build associated gene networks using gene expression profiles

Description

Returns the sub-network formed by the given genes.

Usage

getSubNetwork(network, genes, showWarnings=TRUE)

Arguments

network	GenesNetwork or GenesNetwork list containing the whole network.
genes	GenesRanking or character vector. Genes in the new network.
showWarnings	Logical. If true, shows warnings if the given genes are not in the network.

Value

A GenesNetwork or list of networks between the given genes.

See Also

Main package function and classifier training: geNetClassifier
This method's class (GenesNetwork) help page.

Examples

data(leukemiasClassifier)
clGenesSubNet <- getSubNetwork(leukemiasClassifier@genesNetwork, 
leukemiasClassifier@classificationGenes)
getSubNetwork(leukemiasClassifier@genesNetwork, getTopRanking(leukemiasClassifier@genesRanking, numGenesClass=30))

geNetClassifier documentation built on Nov. 8, 2020, 4:53 p.m.