Man pages for geNetClassifier
Classify diseases and build associated gene networks using gene expression profiles

calculateGenesRankingCalculate GenesRanking
externalValidation.probMatrixProbability matrix.
externalValidation.statsStatistics of the external validation.
gClasses-methodsClasses in the ranking.
GeneralizationError-classClass "GeneralizationError" (slot of GeNetClassifierReturn)
genesDetails-methodsDetails of the genes in the network.
GenesNetwork-classClass "GenesNetwork"
GenesRanking-classClass "GenesRanking"
geneSymbolsGene symbols associated to human Ensemble IDs.
geNetClassifierMain function of the geNetClassifier package. Trains the...
geNetClassifier-packageclassify diseases and build associated gene networks using...
GeNetClassifierReturn-classClass "GeNetClassifierReturn"
getEdges-methodsEdges in the network.
getNodes-methodsNodes in the network.
getNumEdges-methodsNumber of edges in the network.
getNumNodes-methodsNumber of nodes in the network.
getRanking-methodsShows the genes ranking.
getSubNetwork-methodsGet a sub-network.
getTopRanking-methodsGets a new ranking with the given top genes.
leukemiasClassifierSample leukemias classifier
network2txtnetwork2txt
numGenes-methodsNumber of genes in the genesRanking.
numSignificantGenes-methodsNumber of ranked genes over the posterior probability...
overview-methodsOverview
plotAssignmentsPlot assignment probabilities
plotDiscriminantPowerPlots the genes' Discriminant Power.
plotExpressionProfilesExpression profiles plot.
plot.GenesRankingPlot GenesRanking
plot.GeNetClassifierReturnPlot GeNetClassifierReturn
plotNetworkPlot GenesNetwork
queryGeNetClassifierQueries the classifier trained with geNetClassifier.
querySummarySummary of the query.
setProperties-methodsSet properties
geNetClassifier documentation built on May 2, 2018, 4:20 a.m.