geneSymbols: Gene symbols associated to human Ensemble IDs.

In geNetClassifier: Classify diseases and build associated gene networks using gene expression profiles

Description

Gene symbols to use as gene labels in the package examples.

Source: simplified version of genes.human.annotation from GATExplorer (http://bioinfow.dep.usal.es/xgate/mapping/mapping.php?content=annotationfiles).

Usage

data(geneSymbols)

Format

Named character vector containing the gene symbol as content, and the associated Ensemble ID as name.

Examples

data(geneSymbols)
head(geneSymbols)

Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: EBarrays
Loading required package: lattice
Loading required package: minet
 ENSG00000223972  ENSG00000227232  ENSG00000243485  ENSG00000221311 
      "DDX11L10"         "WASH5P"   "RP11-34P13.3" "hsa-mir-1302-2" 
 ENSG00000237613  ENSG00000240361 
       "FAM138A"        "OR4G11P" 

geNetClassifier documentation built on Nov. 8, 2020, 4:53 p.m.