Man pages for geNetClassifier
Classify diseases and build associated gene networks using gene expression profiles
| calculateGenesRanking | Calculate GenesRanking |
| externalValidation.probMatrix | Probability matrix. |
| externalValidation.stats | Statistics of the external validation. |
| gClasses-methods | Classes in the ranking. |
| GeneralizationError-class | Class "GeneralizationError" (slot of GeNetClassifierReturn) |
| genesDetails-methods | Details of the genes in the network. |
| GenesNetwork-class | Class "GenesNetwork" |
| GenesRanking-class | Class "GenesRanking" |
| geneSymbols | Gene symbols associated to human Ensemble IDs. |
| geNetClassifier | Main function of the geNetClassifier package. Trains the... |
| geNetClassifier-package | classify diseases and build associated gene networks using... |
| GeNetClassifierReturn-class | Class "GeNetClassifierReturn" |
| getEdges-methods | Edges in the network. |
| getNodes-methods | Nodes in the network. |
| getNumEdges-methods | Number of edges in the network. |
| getNumNodes-methods | Number of nodes in the network. |
| getRanking-methods | Shows the genes ranking. |
| getSubNetwork-methods | Get a sub-network. |
| getTopRanking-methods | Gets a new ranking with the given top genes. |
| leukemiasClassifier | Sample leukemias classifier |
| network2txt | network2txt |
| numGenes-methods | Number of genes in the genesRanking. |
| numSignificantGenes-methods | Number of ranked genes over the posterior probability... |
| overview-methods | Overview |
| plotAssignments | Plot assignment probabilities |
| plotDiscriminantPower | Plots the genes' Discriminant Power. |
| plotExpressionProfiles | Expression profiles plot. |
| plot.GenesRanking | Plot GenesRanking |
| plot.GeNetClassifierReturn | Plot GeNetClassifierReturn |
| plotNetwork | Plot GenesNetwork |
| queryGeNetClassifier | Queries the classifier trained with geNetClassifier. |
| querySummary | Summary of the query. |
| setProperties-methods | Set properties |
