Some basic functions for filtering genes
|Author||R. Gentleman, V. Carey, W. Huber, F. Hahne|
|Date of publication||None|
|Maintainer||Bioconductor Package Maintainer <email@example.com>|
Anova: A filter function for Analysis of Variance
coxfilter: A filter function for univariate Cox regression.
cv: A filter function for the coefficient of variation.
dist2: Calculate an n-by-n matrix by applying a function to all...
eSetFilter: A function to filter an eSet object
filtered_p: Compute and adjust p-values, with filtering
filterfun: Creates a first FALSE exiting function from the list of...
filter_volcano: Volcano plot for overall variance filtering
findLargest: Find the Entrez Gene ID corresponding to the largest...
gapFilter: A filter to select genes based on there being a gap.
genefilter: A function to filter genes.
genefinder: Finds genes that have similar patterns of expression.
genescale: Scales a matrix or vector.
half.range.mode: Mode estimation for continuous data
kappa_p: Compute proportionality constant for fold change bound.
kOverA: A filter function for k elements larger than A.
maxA: A filter function to filter according to the maximum.
nsFilter: Filtering of Features in an ExpressionSet
pOverA: A filter function to filter according to the proportion of...
rejection_plot: Plot rejections vs. p-value cutoff
rowFtests: t-tests and F-tests for rows or columns of a matrix
rowpAUCs: Rowwise ROC and pAUC computation
rowROC-class: Class "rowROC"
rowSds: Row variance and standard deviation of a numeric array
shorth: A location estimator based on the shorth
tdata: A small test dataset of Affymetrix Expression data.
ttest: A filter function for a t.test