genefilter: genefilter: methods for filtering genes from high-throughput experiments

Some basic functions for filtering genes

AuthorR. Gentleman, V. Carey, W. Huber, F. Hahne
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.56.0

View on Bioconductor

Man pages

Functions

Anova Man page
area Man page
area,rowROC-method Man page
AUC Man page
AUC,rowROC-method Man page
colFtests Man page
colFtests,ExpressionSet,character-method Man page
colFtests,ExpressionSet,factor-method Man page
colFtests,matrix,factor-method Man page
colttests Man page
colttests,ExpressionSet,character-method Man page
colttests,ExpressionSet,factor-method Man page
colttests,ExpressionSet,missing-method Man page
colttests,matrix,factor-method Man page
colttests,matrix,missing-method Man page
coxfilter Man page
cv Man page
dist2 Man page
eSetFilter Man page
fastT Man page
featureFilter Man page
filtered_p Man page
filtered_R Man page
filterfun Man page
filter_volcano Man page
findLargest Man page
gapFilter Man page
genefilter Man page
genefinder Man page
genefinder,ExpressionSet,vector-method Man page
genefinder,matrix,vector-method Man page
genescale Man page
getFilterNames Man page
getFuncDesc Man page
getRdAsText Man page
half.range.mode Man page
isESet Man page
kappa_p Man page
kappa_t Man page
kOverA Man page
maxA Man page
nsFilter Man page
nsFilter,ExpressionSet-method Man page
parseArgs Man page
parseDesc Man page
pAUC Man page
pAUC,rowROC,numeric-method Man page
plot,rowROC,missing-method Man page
pOverA Man page
rejection_plot Man page
rowFtests Man page
rowFtests,ExpressionSet,character-method Man page
rowFtests,ExpressionSet,factor-method Man page
rowFtests,matrix,factor-method Man page
rowpAUCs Man page
rowpAUCs,ExpressionSet,ANY-method Man page
rowpAUCs,ExpressionSet,character-method Man page
rowpAUCs,matrix,factor-method Man page
rowpAUCs,matrix,numeric-method Man page
rowpAUCs-methods Man page
rowROC Man page
rowROC-class Man page
[,rowROC-method Man page
rowSds Man page
rowttests Man page
rowttests,ExpressionSet,character-method Man page
rowttests,ExpressionSet,factor-method Man page
rowttests,ExpressionSet,missing-method Man page
rowttests,matrix,factor-method Man page
rowttests,matrix,missing-method Man page
rowVars Man page
sens Man page
sens,rowROC-method Man page
setESetArgs Man page
shorth Man page
showESet Man page
show,rowROC-method Man page
spec Man page
spec,rowROC-method Man page
tdata Man page
ttest Man page
varFilter Man page

Files

genefilter/.Rinstignore
genefilter/DESCRIPTION
genefilter/NAMESPACE
genefilter/NEWS
genefilter/R
genefilter/R/AllClasses.R genefilter/R/AllGenerics.R genefilter/R/all.R genefilter/R/dist2.R genefilter/R/eSetFilter.R genefilter/R/fastT.R genefilter/R/filter_volcano.R genefilter/R/filtered_p.R genefilter/R/genefinder.R genefilter/R/half.range.mode.R genefilter/R/kappa_p.R genefilter/R/nsFilter.R genefilter/R/rejection_plot.R genefilter/R/rowROC-accessors.R genefilter/R/rowSds.R genefilter/R/rowpAUCs-methods.R genefilter/R/rowttests-methods.R genefilter/R/shorth.R genefilter/R/zzz.R
genefilter/build
genefilter/build/vignette.rds
genefilter/data
genefilter/data/tdata.R
genefilter/docs
genefilter/docs/Cluster.pdf
genefilter/docs/gcluster.tex
genefilter/docs/gfilter.tex
genefilter/inst
genefilter/inst/doc
genefilter/inst/doc/howtogenefilter.R
genefilter/inst/doc/howtogenefilter.Rnw
genefilter/inst/doc/howtogenefilter.pdf
genefilter/inst/doc/howtogenefinder.R
genefilter/inst/doc/howtogenefinder.Rnw
genefilter/inst/doc/howtogenefinder.pdf
genefilter/inst/doc/independent_filtering.R
genefilter/inst/doc/independent_filtering.Rnw
genefilter/inst/doc/independent_filtering.pdf
genefilter/inst/doc/independent_filtering_plots.R
genefilter/inst/doc/independent_filtering_plots.Rnw
genefilter/inst/doc/independent_filtering_plots.pdf
genefilter/inst/wFun
genefilter/inst/wFun/Anova.xml
genefilter/inst/wFun/coxfilter.xml
genefilter/inst/wFun/cv.xml
genefilter/inst/wFun/gapFilter.xml
genefilter/inst/wFun/kOverA.xml
genefilter/inst/wFun/maxA.xml
genefilter/inst/wFun/pOverA.xml
genefilter/inst/wFun/ttest.xml
genefilter/man
genefilter/man/Anova.Rd genefilter/man/coxfilter.Rd genefilter/man/cv.Rd genefilter/man/dist2.Rd genefilter/man/eSetFilter.Rd genefilter/man/filter_volcano.Rd genefilter/man/filtered_p.Rd genefilter/man/filterfun.Rd genefilter/man/findLargest.Rd genefilter/man/gapFilter.Rd genefilter/man/genefilter.Rd genefilter/man/genefinder.Rd genefilter/man/genescale.Rd genefilter/man/half.range.mode.Rd genefilter/man/kOverA.Rd genefilter/man/kappa_p.Rd genefilter/man/maxA.Rd genefilter/man/nsFilter.Rd genefilter/man/pOverA.Rd genefilter/man/rejection_plot.Rd genefilter/man/rowFtests.Rd genefilter/man/rowROC-class.Rd genefilter/man/rowSds.Rd genefilter/man/rowpAUCs.Rd genefilter/man/shorth.Rd genefilter/man/tdata.Rd genefilter/man/ttest.Rd
genefilter/src
genefilter/src/genefilter.h
genefilter/src/half_range_mode.cpp
genefilter/src/init.c
genefilter/src/nd.c
genefilter/src/pAUC.c
genefilter/src/rowPAUCs.c
genefilter/src/rowttests.c
genefilter/src/ttest.f
genefilter/vignettes
genefilter/vignettes/howtogenefilter.Rnw
genefilter/vignettes/howtogenefinder.Rnw
genefilter/vignettes/independent_filtering.Rnw
genefilter/vignettes/independent_filtering_plots.Rnw
genefilter/vignettes/library.bib

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