API for genotypeeval
QA/QC of a gVCF or VCF file
| Global functions | |
|---|---|
| GoldData-class | Man page |
| GoldDataFromGRanges | Man page Source code |
| GoldDataParam | Man page Source code |
| GoldDataParam-class | Man page |
| ReadGoldData | Man page Source code |
| ReadVCFData | Man page Source code |
| ReadVCFDataChunk | Man page Source code |
| VCFData-class | Man page |
| VCFEvaluate | Man page Source code |
| VCFQAParam | Man page Source code |
| VCFQAParam-class | Man page |
| VCFQAReport-class | Man page |
| XHeterozygosity | Man page |
| admixture | Man page |
| callbyChrPlot | Man page |
| calltypePlot | Man page |
| chunkData | Man page Source code |
| computeTiTv | Man page Source code |
| didSamplePass | Man page Source code |
| didSamplePassOverall | Man page Source code |
| genotypeQualityPlot | Man page |
| getCoefs | Man page Source code |
| getDescriptors | Man page |
| getName | Man page Source code |
| getPlots | Man page Source code |
| getResults | Man page Source code |
| getVR | Man page Source code |
| goldCompare | Man page |
| hetGap | Man page |
| hetsMasked | Man page |
| homrefPlot | Man page |
| meanGQ | Man page |
| myf | Man page Source code |
| numberCalls | Man page |
| numberOfHets | Man page |
| numberOfHomRefs | Man page |
| numberOfHomVars | Man page |
| percentHets | Man page |
| percentInTarget | Man page |
| rareCompare | Man page |
| readDepth | Man page |
| readVcfGold | Man page Source code |
| readdepthPlot | Man page |
| reformatData | Man page Source code |
| titv | Man page |
