hetsMasked: Number hets in masked GRanges
In genotypeeval: QA/QC of a gVCF or VCF file
Description
Usage
Arguments
Value
Description
Number hets in masked GRanges
Usage
1
hetsMasked(x, masked.limits, non.masked.limits, masked)
Arguments
x
myvcf of interest
masked.limits
Limits for self chain region (lower and upper)
non.masked.limits
Limits for non self chain region (lower and upper)
masked
GRanges of difficult regions (repeat masked, paralogs, self chain, etc)
Value
list with name, logical vector (passed or not), numeric vector number hets in masked region and not in masked region
genotypeeval documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value
Description
Number hets in masked GRanges
Usage
1 | hetsMasked(x, masked.limits, non.masked.limits, masked)
|
Arguments
x |
myvcf of interest |
masked.limits |
Limits for self chain region (lower and upper) |
non.masked.limits |
Limits for non self chain region (lower and upper) |
masked |
GRanges of difficult regions (repeat masked, paralogs, self chain, etc) |
Value
list with name, logical vector (passed or not), numeric vector number hets in masked region and not in masked region
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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