titv: Transition transversion ratio in coding and non-coding

Description Usage Arguments Value

Description

Transition transversion ratio in coding and non-coding

Usage

1
titv(x, coding, ll.nc, ul.nc, ll.c, ul.c)

Arguments

x

myvcf of interest

coding

GRanges of coding regions

ll.nc

lower limit to pass for transition transversion in noncoding

ul.nc

upper limit to pass for transition transversion in noncoding

ll.c

lower limit to pass for transition transversion in coding

ul.c

upper limit to pass for transition transversion in coding

Value

list with name, logical vector (passed or not), numeric vector of transition transversion ratio in coding and non coding regions


genotypeeval documentation built on Nov. 8, 2020, 5:03 p.m.