titv: Transition transversion ratio in coding and non-coding
In genotypeeval: QA/QC of a gVCF or VCF file
Description
Usage
Arguments
Value
Description
Transition transversion ratio in coding and non-coding
Usage
1
titv(x, coding, ll.nc, ul.nc, ll.c, ul.c)
Arguments
x
myvcf of interest
coding
GRanges of coding regions
ll.nc
lower limit to pass for transition transversion in noncoding
ul.nc
upper limit to pass for transition transversion in noncoding
ll.c
lower limit to pass for transition transversion in coding
ul.c
upper limit to pass for transition transversion in coding
Value
list with name, logical vector (passed or not), numeric vector of transition transversion ratio in coding and non coding regions
genotypeeval documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value
Description
Transition transversion ratio in coding and non-coding
Usage
1 | titv(x, coding, ll.nc, ul.nc, ll.c, ul.c)
|
Arguments
x |
myvcf of interest |
coding |
GRanges of coding regions |
ll.nc |
lower limit to pass for transition transversion in noncoding |
ul.nc |
upper limit to pass for transition transversion in noncoding |
ll.c |
lower limit to pass for transition transversion in coding |
ul.c |
upper limit to pass for transition transversion in coding |
Value
list with name, logical vector (passed or not), numeric vector of transition transversion ratio in coding and non coding regions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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