rareCompare: Comparator to rare variants. Rare is defined as 0.01 percent...
In genotypeeval: QA/QC of a gVCF or VCF file
Description
Usage
Arguments
Value
Description
Comparator to rare variants. Rare is defined as 0.01 percent or less
Usage
1
rareCompare(x, gr, percent.h)
Arguments
x
myvcf of interest
gr
GRanges of gold comparator
percent.h
what percent higher hets than hom_alt?
Value
list with name, logical (passed or not), numeric (proportion hets in rare)
genotypeeval documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value
Description
Comparator to rare variants. Rare is defined as 0.01 percent or less
Usage
1 | rareCompare(x, gr, percent.h)
|
Arguments
x |
myvcf of interest |
gr |
GRanges of gold comparator |
percent.h |
what percent higher hets than hom_alt? |
Value
list with name, logical (passed or not), numeric (proportion hets in rare)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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