chunkData: chunkData is a private function to read in a chunk and...
In genotypeeval: QA/QC of a gVCF or VCF file
Description
Usage
Arguments
Value
Description
chunkData is a private function to read in a chunk and process it. This is a private function and is not meant to be called by the user. An example is provided in line with bioconductor policies.
Usage
1
chunkData(myfn, genome, svp, admixture.ref)
Arguments
myfn
Filename/path of file
genome
GRCh37 or GRCh38
svp
Params specified for readVCFAsVRanges
admixture.ref
VRanges with MAF for superpopulations (EAS, AFR, EUR)
Value
VRanges of single processed chromosome
genotypeeval documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value
Description
chunkData is a private function to read in a chunk and process it. This is a private function and is not meant to be called by the user. An example is provided in line with bioconductor policies.
Usage
1 | chunkData(myfn, genome, svp, admixture.ref)
|
Arguments
myfn |
Filename/path of file |
genome |
GRCh37 or GRCh38 |
svp |
Params specified for readVCFAsVRanges |
admixture.ref |
VRanges with MAF for superpopulations (EAS, AFR, EUR) |
Value
VRanges of single processed chromosome
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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