API for genotypeeval
QA/QC of a gVCF or VCF file

Global functions
GoldData-class Man page
GoldDataFromGRanges Man page
GoldDataParam Man page
GoldDataParam-class Man page
ReadGoldData Man page
ReadVCFData Man page
ReadVCFDataChunk Man page
VCFData-class Man page
VCFEvaluate Man page
VCFQAParam Man page
VCFQAParam-class Man page
VCFQAReport-class Man page
XHeterozygosity Man page
admixture Man page
callbyChrPlot Man page
calltypePlot Man page
chunkData Man page
computeTiTv Man page
didSamplePass Man page
didSamplePassOverall Man page
genotypeQualityPlot Man page
getCoefs Man page
getDescriptors Man page
getName Man page
getPlots Man page
getResults Man page
getVR Man page
goldCompare Man page
hetGap Man page
hetsMasked Man page
homrefPlot Man page
meanGQ Man page
myf Man page
numberCalls Man page
numberOfHets Man page
numberOfHomRefs Man page
numberOfHomVars Man page
percentHets Man page
percentInTarget Man page
rareCompare Man page
readDepth Man page
readVcfGold Man page
readdepthPlot Man page
reformatData Man page
titv Man page
genotypeeval documentation built on May 6, 2019, 3:36 a.m.