API for genotypeeval
QA/QC of a gVCF or VCF file

Global functions
GoldData-class Man page
GoldDataFromGRanges Man page Source code
GoldDataParam Man page Source code
GoldDataParam-class Man page
ReadGoldData Man page Source code
ReadVCFData Man page Source code
ReadVCFDataChunk Man page Source code
VCFData-class Man page
VCFEvaluate Man page Source code
VCFQAParam Man page Source code
VCFQAParam-class Man page
VCFQAReport-class Man page
admixture Man page
callbyChrPlot Man page
calltypePlot Man page
chunkData Man page Source code
computeTiTv Man page Source code
didSamplePass Man page Source code
didSamplePassOverall Man page Source code
genotypeQualityPlot Man page
getCoefs Man page Source code
getName Man page Source code
getPlots Man page Source code
getResults Man page Source code
getVR Man page Source code
goldCompare Man page
hetGap Man page
hetsMasked Man page
homrefPlot Man page
makeHistogram Source code
meanGQ Man page
myf Man page Source code
numberCalls Man page
numberOfHets Man page
numberOfHomRefs Man page
numberOfHomVars Man page
pcaPlot Source code
percentHets Man page
percentInTarget Man page
rareCompare Man page
readDepth Man page
readVcfGold Man page Source code
readdepthPlot Man page
reformatData Man page Source code
titv Man page
tsnePlot Source code
genotypeeval documentation built on May 2, 2018, 4:06 a.m.