getVR: getVr is a Getter. Returns vr slot.
In genotypeeval: QA/QC of a gVCF or VCF file
Description
Usage
Arguments
Value
Examples
Description
getVr is a Getter. Returns vr slot.
Usage
1
getVR(x)
Arguments
x
VCFData object
Value
VRanges
Examples
1
2
3
4
5
6
vcffn <- system.file("ext-data", "chr22.GRCh38.vcf.gz", package="genotypeeval")
mydir <- paste(dirname(vcffn), "/", sep="")
myfile <-basename(vcffn)
svp <- ScanVcfParam(which=GRanges("22", IRanges(0,1e5)), geno="GT")
vcf <- ReadVCFData(mydir, myfile, "GRCh38")
getVR(vcf)
genotypeeval documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value Examples
Description
getVr is a Getter. Returns vr slot.
Usage
1 | getVR(x)
|
Arguments
x |
VCFData object |
Value
VRanges
Examples
1 2 3 4 5 6 | vcffn <- system.file("ext-data", "chr22.GRCh38.vcf.gz", package="genotypeeval")
mydir <- paste(dirname(vcffn), "/", sep="")
myfile <-basename(vcffn)
svp <- ScanVcfParam(which=GRanges("22", IRanges(0,1e5)), geno="GT")
vcf <- ReadVCFData(mydir, myfile, "GRCh38")
getVR(vcf)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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