iClusterPlus: Integrative clustering of multi-type genomic data

Integrative clustering of multiple genomic data using a joint latent variable model

Author
Qianxing Mo, Ronglai Shen
Date of publication
None
Maintainer
Qianxing Mo <qmo@bcm.edu>, Ronglai Shen <shenr@mskcc.org>
License
GPL (>= 2)
Version
1.10.0

View on Bioconductor

Man pages

breast.chr17
Breast cancer data set DNA copy number and mRNA expression...
CNregions
A function to remove redundant copy number regions
compute.pod
A function to compute the proportion of deviation from...
coord
genomic coordinates
gbm
GBM data
glp
good lattice points using the uniform design
iCluster
Integrative clustering of multiple genomic data types
iCluster2
Integrative clustering of multiple genomic data types
iClusterPlus
Integrative clustering of multiple genomic data types
plotHeatmap
A function to generate heatmap panels sorted by integrated...
plotiCluster
A function to generate cluster separability matrix plot.
plotRI
A function to generate reproducibility index plot.
simuResult
The results for the analysis of the simulated data.
tune.iCluster2
Integrative clustering of multiple genomic data types
tune.iClusterPlus
Integrative clustering of multiple genomic data
utility
Utility functions for iClusterPlus package
variation.hg18.v10.nov.2010
Human genome variants of the NCBI 36 (hg18) assembly

Files in this package

iClusterPlus/DESCRIPTION
iClusterPlus/NAMESPACE
iClusterPlus/R
iClusterPlus/R/CNregions.R
iClusterPlus/R/compute.pod.R
iClusterPlus/R/iCluster.R
iClusterPlus/R/iCluster2.R
iClusterPlus/R/iClusterPlus.R
iClusterPlus/R/plotHeatmap.R
iClusterPlus/R/plotRI.R
iClusterPlus/R/plotiCluster.R
iClusterPlus/R/tune.iCluster2.R
iClusterPlus/R/tune.iClusterPlus.R
iClusterPlus/R/utility.R
iClusterPlus/build
iClusterPlus/build/vignette.rds
iClusterPlus/cleanup
iClusterPlus/configure
iClusterPlus/configure.in
iClusterPlus/data
iClusterPlus/data/breast.chr17.rda
iClusterPlus/data/coord.rda
iClusterPlus/data/datalist
iClusterPlus/data/gbm.rda
iClusterPlus/data/glp.rda
iClusterPlus/data/simuResult.rda
iClusterPlus/data/variation.hg18.v10.nov.2010.rda
iClusterPlus/demo
iClusterPlus/demo/00Index
iClusterPlus/demo/demo.R
iClusterPlus/demo/iCluster.demo.R
iClusterPlus/inst
iClusterPlus/inst/NEWS
iClusterPlus/inst/doc
iClusterPlus/inst/doc/iClusterPlus.Rnw
iClusterPlus/inst/doc/iClusterPlus.pdf
iClusterPlus/inst/doc/iManual.pdf
iClusterPlus/inst/unitTests
iClusterPlus/inst/unitTests/test_iClusterPlus.R
iClusterPlus/man
iClusterPlus/man/CNregions.Rd
iClusterPlus/man/breast.chr17.Rd
iClusterPlus/man/compute.pod.Rd
iClusterPlus/man/coord.Rd
iClusterPlus/man/gbm.Rd
iClusterPlus/man/glp.Rd
iClusterPlus/man/iCluster.Rd
iClusterPlus/man/iCluster2.Rd
iClusterPlus/man/iClusterPlus.Rd
iClusterPlus/man/plotHeatmap.Rd
iClusterPlus/man/plotRI.Rd
iClusterPlus/man/plotiCluster.Rd
iClusterPlus/man/simuResult.Rd
iClusterPlus/man/tune.iCluster2.Rd
iClusterPlus/man/tune.iClusterPlus.Rd
iClusterPlus/man/utility.Rd
iClusterPlus/man/variation.hg18.v10.nov.2010.Rd
iClusterPlus/src
iClusterPlus/src/Makevars.in
iClusterPlus/src/Makevars.win
iClusterPlus/src/iClusterPlus.c
iClusterPlus/src/newGLMnet.f90
iClusterPlus/tests
iClusterPlus/tests/runTests.R
iClusterPlus/vignettes
iClusterPlus/vignettes/iClusterPlus.Rnw